SBCC Home  Biological Sciences Home Page  Biology 124  Biological Oceanography

Be sure to study your lecture notes along with lecture quizzes 3 (Tropics), and 5 (Poles). Lecture quiz 4 was a 'pop' quiz without any content. This outline should help you organize your lecture notes but be sure to review all diagrams in your lecture notes.

I. The Benthos

A. General Considerations
    1. About 90% of all marine species are benthic at some time in their life (lots of diversity)
    2. The benthos is found intertidal, shelf, bathyal, abyssal, hadal
    3. Almost all large plants are benthic (macro-algae) in the photic zone (epiflora)
    4. Both epifaunal and infaunal benthos found (animals)
    5. Major area of decomposition
    6. Sediments (eroded crustal material) sink when currents no longer keep them in suspension
B. The physical bottom substrate: rock or sediment
    1. Terrogenous (lithogenous): from land by weathering and erosion of crustal rock
      a. found along the continental borderlands (shelf)
      b. found over much of central north Pacific and polar regions
    2. Biogenous (oozes): from life forms; builds up from 1mm-1cm/1,000yr - mix with sediments
      a. Calcareous oozes
        1. from small forams, snails, sea urchins (calcium shell pieces)
        2. found in temperate waters less than about 4-5,000m deep (dissolve deeper) = South Pacific, North Atlantic and South Atlantic, Indian Ocean
      b. Siliceous oozes
        1. from diatoms, radiolarians (glass shell pieces)
        2. found in high latitude sea floors (around Antarctica, North Pacific) and equatorial Pacific
    3. Hydrogenous (= authigenic) - possible natural resource (for metals) of future
      a. precipitate from sea water
      b. example is manganese nodules (layers of metals: Fe, Mn, Ni, Cu, Co)
        i. pea gravel to potato size
        ii. do not get buried (theories about infaunal worms moving sediments may explain this)
      c. international problems with ownership of deep sea where they occur if anyone wants to mine
C. Changes to the bottom produced by organisms
    1. mixing by infaunal movement (mostly infaunal worms)
    2. oxygen added as water circulated through tubes in substrate (mostly tube worms)
    3. cement sediments for tubes (especially worms)
    4. compact fecal pellets (ghost shrimp/mud shrimp and sea cucumbers
    5. bore into rock (clams)
D. Benthic feeding modes in ocean animals (review Cellular Respiration and Photosynthesis)
    1. herbivores - sea urchins
    2. carnivores - starfish
    3. omnivores
    plus:
    4. filter feeders - plankton eaters (phyto/zoo/or both) ... brittlestars, sand dollars
    5. deposit feeders - injest sand/mud, digest organics, release cleaned sediments ... sea cucumbers
    6. absorptive feeders - absorb organics from water ... sea urchins in polluted water (not reproductive)
    7. scavengers - eat anything - plant, animal, alive, dead ... crabs, lobsters
E. Benthic Reproduction modes in ocean animals
    1. Parents
      a. separate sexed
      b. hermaphroditic
    2. Fertilization
      a. Mating
      b. Broadcast spawning
    3. Juveniles hatched from fertilized eggs (zygotes) that result from mating or spawning
      a. benthic (only a few species have benthic juveniles)
      b. pelagic
        i. nektonic (babies are good swimmers)
        ii. planktonic may be swimming or non swimming (75% benthic species) (MPL)
          - sink, swim behaviour for awhile then settle (possibly to chemical cue) to bottom and metamorphose into small adult
          - different times (weeks or months usually) for each planktonic species to stay in the plankton before becoming benthic

II. The Tropics - shallow water benthic areas

A. Basic tropical ecology: few environmental changes throughout the year (stable)
    1. Thermocline present all year from solar heated surface water, locks nutrients out of photic zone
    2. Although there is plenty of light, few plants grow because they are nutrient limited
    3. Without a plant base, little else exists; a desert
    4. Clear, blue water
    5. Unique, very productive ecosystem = coral reef (but only 1% of tropical surface area)
B. Classical coral reef formations change through time: an oasis in the tropical desert
    1. New Island at or near the surface of the sea (no reef)
    2. Fringing reef along edge of island as planktonic coral larvae settle and grow
    3. Barrier reef with a lagoon as island sinks and coral grows upward
    4. Atoll as island sinks below sea level but coral continues to grow up forming a ring (usually the ring is broken)
    5. If island sinks too fast and coral can not keep up, the whole thing sinks out of sight (seamounts, guyots)
C. Coral is an animal
    1. Basic body form is a polyp that secretes a hard calcium carbonate corallite in which it lives (cup-like with radiating septa) and can be solitary or colonial
    2. May feed on small creatures using stinging cells on tentacles
    3. Two types of coral
      a. Ahermatypic: may live anywhere (dark, light; cold, warm; any latitude); may have symbiotic zooxanthellae but not dependent on them
      b. Hermatypic: reef builders; limited to the photic zone in the tropics; all have symbiotic zooxanthellae that they depend on for food=a mutualistic symbiosis
        i. Warm water (18 degrees C or higher) needed for these food sharing zooxanthellae
        ii. clear water with little sediment (for light)
        iii. hard bottom for attachment of the coral animal
        iv. light for zooxanthellae in their tissues (restricted to photic zone)
          - zooxanthellae (photosynthetic) need light, give coral oxygen, food in the form of excess carbohydrates (sugar) from photosynthesis (they are not consumed directly by coral), and often its color
          - coral gives zooxanthellae CO2, fecal material for nutrients (N,P,K), and a place to live
        v. cannot tolerate fresh water
        vi. reef builders are mainly colonial forms enlarging as coral heads with asexual reproduction year after year enlarging the coral heads
    4. Sexual reproduction of coral when conditions are good
      a. Broadcast spawn (often entire reefs synchronously spawn)
      b. Fertilization is in the water
      c. Fertilized egg (zygote) develops into planula planktonic larvae
      d. Planula larvae sink and swim as part of the plankton (many eaten by filter feeders)
      e. Planula larvae eventually sink to the bottom, metamorphose into a polyp, and secrete a corallite to become the benthic coral animal
      f. grow as a solitary polyp -or- colonial polyps (=coral head)
    5. Coral reefs exist as an oasis: nutrient recycling within the coral-zooxanthellae relationship; nothing is lost to outside
      a. many other organisms find refuge and food there
      b. Coral reefs also have a large amount of coralline algae and shells from snails and urchins adding to reef structure
D. Zonation on coral reefs (from windward to leeward side on a barrier reef)
    1. Typical cross section of a barrier reef - from windward to leeward(can be adapted to atolls)
      a. dead base below 150 meters (windward)
      b. living base as deep as 150m up to 50m: few species (light limited) (sponges)
      c. transition zone from 50m to 20m
      d. buttress zone from 20m to low tide: heavy surf, much oxygen, much light; hardy species live there, buttress and groove formations break up reef and may create tunnels from lagoon to reef wall (eroded by sediments from lagoon) (lots of coral)
      e. algal ridge on windward side (coraline algae): severe habitat - caps buttress zone near sea level, needs surf and high oxygen levels from crashing waves
      f. windward reef flat: lagoon area between algal ridge and island, calm; many species - patch reefs (micro-atolls)
      g. island
      h. leeward reef flat: calm, many species - patch reefs (micro-atolls)
      i. knoll (well below sea level) - on top of buttress zone on leeward side
      j. buttress zone on leeward side (also with possible buttress and groove formations) from knoll to 20m
      k. transition zone 20m to 50m
      l. living base from 50m to 150m (leeward)
      m. dead base below 150m
E. Buildup and Breakdown of coral reefs
    1. Buildup
      a. Physical = piling up of sediment as a cay which may develop on a reef (barrier or atolls) when sediments pile up above sea level. These can be stabilized by plants and become known as islands which may be places for buildings and resorts in some areas.
      b. Biological = growth of coral and added CaCO3 (as volcanic islands sink, as sea level rises, as reef harmed by waves)
    2. Breakdown
      a. Physical = waves, winds, hurricanes, currents
      b. Biological = coral can't grow fast enough, animals eating reef (parrot fish, crown of thorns), bleaching (?may or may not create breakdown)
      * crown of thorns a major problem for coral reefs or a natural cycle?
        i. Starfish found in tropics that eats coral at night
        ii. When population levels are normal there is a balance of nature
        iii. When populations of this starfish explode there are problems with the coral reefs and possibly with the islands that they protect
        iv. Throughout history there have been periodic population explosions (from sediment layers and ancient tales)
        v. This starfish hurts man (with spines)
        vi. 1960's population explosion may have been result of over collecting of predator snail, periodic historical reasons, man's addition of more runoff from land adding nutrients to water that favored larval starfish or other factors. Most areas of population explosion have settled down but is problematic on some reefs.
F. Australia's Great Barrier Reef (in area of world's greatest coral diversity)
    1. Largest biological structure on Earth
      a. Located on Australia's northeast coast
      b. About 1,200 miles long
      c. Between 10 and 150 miles offshore
      d. Composed of many reefs (2,000 +)
    2. Not a true "barrier reef" as in classical coral reef terms
      a. Australia is continental (not oceanic crust)
      b. Area of reef is not sinking (as in classic coral reefs on 'sinking' islands)
      c. History
        1. 15,000 years ago (during an ice age) area was a flat plain
          a. Sea level 300-400 feet lower than now
          b. As glaciers melted sea level rose, coming in over this flat plain, carrying coral larvae
          c. Many coral heads developed in this shallow area
          d. As this area deepened some of the coral heads grew upward and managed to keep up with rising sea level
        2. 6,500 years ago sea level stabilized
          a. Coral heads that were still in upper lighted waters (so their zooxanthellae could survive) grew out
          b. Formed table reefs and ribbon reefs depending on the environment
            1. Storms, waves, hurricanes mow down reefs
            2. Some animals destroy reefs (like crown of thorns and parrot fish)
            3. Coral and other organisms build up reefs
      d. Each reef (2,000 +) in the Great Barrier Reef is unique
        1. Many beautiful things (true and soft corals, fish, worms, sponges)
        2. Many unique things (clown fish and anemone host, sharks)
        3. Some poisonous things can kill humans in this area
          a. Sea Wasp = Box Jellyfish (most poisonous jellyfish)
          b. Sea Snakes
          c. Blue Ring Octopus (most poisonous octopus)
          d. Stonefish
    3. The Great Barrier Reef is protected as a National Park by Australia
      a. Some areas for tourism
      b. Some areas for science
      c. Some areas for commercial fishing
      d. Some areas for oil drilling
      e. Some areas set aside for non entry
      f. Philosophy is to protect the reef so that it will be exactly the same in the years to come

III. Poles

A. Six month daylight (2-3 month high productivity); six month dark
    1. Arctic: north, no land, ice only; summer = June, July; (an ocean surrounded by land)
    2. Antarctica: south, large continent, covered with ice; summer = December, January; (land surrounded by ocean)
B. Ice
    1. Sea ice: from salt water freezing (with salt) - comes and goes every year, meling in summer and freezing in winter
      a. Ice crystals (slushy) - each crystal without salt; floating in super salty liquid brine
      b. ice rind (.5 cm and less) - traps salt
      c. pancake ice (1/2-1 meter pieces across, edges built up like lily pads)
      d. ice floe (solid)
    2. Ice from precipitation (no salt) from snow, rain, sleet = icebergs and polar cap ice
      a. Arctic: Polar cap ice
        1. 70% Arctic Ocean
        2. hills and valleys of ice
        3. thickness varies from summer to winter
        4. submarines have gone under the ice
      b. Antarctic: Polar cap ice
        1. Ice may be miles thick on top of a continent
        2. Ice may depress continent
        3. 90% world's ice is in Antarctica
        4. World's most violent weather in Antarctica
      c. Icebergs: 'tip of iceberg' - 4/5 to 6/7 underwater; from fresh water (no salt) formed above sealevel - usually broken pieces of glaciers
        1. Arctic: mostly pinnacles
          a. from glaciers "calving", most from Greenland
          b. N. Atlantic Ice Patrol: protects boat traffic
          c. icebergs float east across N. Atlantic (N. Atlantic gyre)
          d. last approx. 2 years; move 5-15 miles/day, slow melting
          e. few icebergs in N. Pacific because of Bering Strait and Aleutian Islands
        2. Antarctic: mostly tabular
          a. from large ice shelves (glaciers flowing out to sea) breaking up
          b. large icebergs - some as big as 100 miles across
          c. not much boat traffic, no patrol
C. Polar communities: shallow water
    1. Not much research in Arctic (benthos all ice except in Alaska, Canada, Russia)
    2. Most research from Antarctic
      a. Stress factor for shallow water communities found nowhere else is ice
      b. Zonation in Antarctic
        1. Zone I: 0 to 15m
          a. in winter ice over continental shelf 1-2m deep
          b. where bottom contacted: life dead (more than 2m along shoreline, down to about 15m)
            1. freezing flesh
            2. mechanically grinding against bottom
          c. leaves shallow subtidal devoid of life (in summer transients visit areas without ice)
          d. physical factors determine life forms
        2. Zone II: 15 to 30m
          a. anchor ice: ice platelets form on bottom, any nucleus
            1. may engulf organisms (sessile, benthic)
            2. often rise and float to surface (ice less dense than water) and stick under sea ice
            3. may carry organisms picked up from bottom (trap)
            4. anemones are characteristic of this zone (they remain attached)
          b. physical factors determine life forms
        3. Zone III: below 30m
          a. anchor ice not found (no freezing of the water)
          b. bottom changes from cobbly rocks (Zone II) to a sponge mat
          c. diverse community, stable, dominated by biological factors (predation) and not physical factors
          d. lots of creatures - sponges, starfish, worms, corals, etc.
D. Antarctic (contains 90% of Earth's ice)
    1. Large continent - as big as US and Mexico together (in winter, when sea ice extends it adds land mass of Canada
    2. Most extreme weather
    3. Used to be farther north; moved south through tectonic movement
    4. IGY (International Geophysical year) of 1950s put international attention on studying Earth. Antarctic was one focus - countries cooperated instead of conflicting for "science"
    5. Antarctic Treaty: established after the IGY 1961, 30 year treaty (was up for review in 1991)
      a. many countries doing scientific research, for 30 years
      b. no land claims, international cooperation, no nuclear weapons
      c. concern with mining claims and pollution reviewed by all countries
      who are party to the Treaty - agreement to stop mining for time being because countries can't agree on terms for mining exploration or development
      d. major international problem if one country steps outside of the Treaty without unanimous agreement (like problems with ownership of deep sea floor)
    6. Concerns about tourism and pollution are a problem especially without any one country with power to enforce rules
    7. Compromise agreement to extend treaty as is agreed upon in 1998 - add 50 year ban on mining (until 2048)
    8. Exploration in polar areas is an extreme challenge
      a. First explorers primarily adventurers but brought back science (temp., winds, currents)
      b. Exceptional explorers = Sir Ernest Shackleton, Scott/Amundsen race to the south pole, Peary/Cook and the north pole.
E. Some unique polar animals (benthic and nektonic)
    1. Krill: Arctic and Antarctic and here (most in Antarctic)
      a. many species; less than an inch to six inches long
      b. often in large groups, eaten by fish, seals, birds, whales
      c. baleen whales of Antarctic feed only on krill
      d. whaling has decreased number of baleen whales and krill population has increased
      e. with more krill, penguin population increases (penguins eat krill)
      f. krill are second step in the polar food chain (like copepods here)
      f. Japanese and Soviets make krill butter and krill cheese (how much can be harvested?)
    2. Penguins: restricted to southern hemisphere
      a. stand upright on short legs: have amusing waddle on land
      b. cannot fly: excellent swimmers, use wings as flippers
      c. colonies found mostly in Antarctic but as far north as Galapagos in areas with cold current
      d. have short dense under feathers and thick hard outer feathers to protect them from the cold
      e. have thick layer of fat
      f. huddle in groups, rock back on their feet to keep heat in
      g. fish and krill eaters
      h. reproduction on land in rookeries often with over a million birds
        1. Most breed during summer near ocean
          a. males come ashore first, establish a pebble nest (usually last year's nest)
          b. females come next, usually go to same nest (and same male) as last year
          c. mating
          d. two eggs laid
          e. parents take turns incubating eggs with warm brood patch on their chest
          f. parents rotate, going to sea to feed and bathe every few hours
          g. chicks hatch
          h. parents take turns feeding chicks till they are ready to leave
          i. everyone leaves
        2. Emperor penguin has interesting breeding behavior (different than other penguins)
          a. breeds and has young in dead winter of Antarctic often walking many miles from ocean (over winter sea ice)
          b. after laying egg, females leave to feed
          c. males incubate egg on top of their feet under a flap of fatty skin, for 2 months (they do not feed)
          d. when chicks hatch, females return to help care for them and males leave to feed
          e. in six months the young can care for themselves
          f. emperor penguins are the largest penguin (up to four feet tall and 100 pounds)
    3. Crabeater Seal: Antarctic only
      a. most numerous seal on Earth
      b. was not hunted by man because its fur usually damaged by its predator (the leopard seal)
      c. feeds on krill (fancy teeth that form a seive)
    4. Leopard Seal - major carnivore in the Antarctic on penguins and seals
    5. Walrus: Arctic only, North Pacific and North Atlantic
      a. in winter and spring drifts on floating ice
      b. in summer rests on shore
      c. very large animals
      d. only seal with tusks: upper canine teeth can be 39 inches
        1. defends itself from polar bears (Arctic only also) with tusks
        2. uses tusks as hooks to climb on ice; chops hole in ice and hangs on ice to breathe
      e. feeding: carnivores on bivalves (clams), but they do not use their tusks to dig!!! They need a sedimentary bottom so feed along edges of continental shelf surrounding the Arctic Ocean.
        1. skid along bottom on tusks looking for clams
        2. when clam siphon is seen they swish their heads in the bottom making a depression, then hydraulically jet water in and out of their mouth through their tongue to drill a hole down to clam
        3. clam is sucked out of shell, leaving shell and hard outer covering of siphon intact
        4. shell is dropped by hole (empty and with skin of siphon inside out)
      f. mating is in the water (males with a penis bone called a baculum)
        1. babies born in spring (usually one and without tusks)
        2. babies cared for by parents for over two years
    6. Polar Bear: Arctic only
      a. biggest of all the bears
      b. black skin under white fur holds heat, thick blubber insulates too
      c. nomads (loners) usually
      d. babies (often twins) born in winter ice den with mom
      e. babies stay with mom for two years while learning to feed on seals and other marine mammals
      f. carnivores on seals and other animals

IV. Deep-Sea

    A. 75% of the ocean bottom is considered "deep-sea" with stable environment
      1. no light, therefore no photosynthesis
      2. cold and constant temperature (-2 to +5 degrees C)
      3. great pressures
      4. areas of abyssal plains, oceanic ridges and rises, trench systems
      5. hard to study - high costs, hard to keep organisms alive from this area, observations are dangerous
    B. Most common areas of deep-sea are sediments
      1. Most sediments have large numbers of infaunal worm deposit feeders
      2. Numerous species of infaunal worms remain because they never get a chance to compete due to their 'cropper' - sea cucumbers
      3. Most species still rely on the surface waters for their food (regular trophic pyramid that is photosynthetic based) as a 'rain' of organic material drifting down:
        a. dead phytoplankton and zooplankton
        b. marine snow (mucus and jelly houses covered with bacteria)
        c. fecal pellets
        d. large dead organisms (like 'whale falls')
    C. DSL (Deep Scattering Layer) found in all oceans except polar areas
      1. Appears as a 'false bottom' over deep-sea
      2. migrates to surface at night (to feed)
      3. migrates to depth in day (to hide)
      4. composed of small fish and crustaceans
    D. Deep-sea nekton is composed primarily of small (2-6 inch) fish
      1. Often deep-sea fish have light organs with bioluminescence used to:
        a. attract food
        b. attract mate
        c. just to 'see'
        d. to frighten predators
      2. Often deep-sea fish have adaptations to assure food capture
        a. large mouth
        b. sharp teeth
        c. distensible stomach
        d. luminescent lure
        e. black lined stomach (to keep bioluminescent prey from showing)
      3. Often deep-sea fish have adaptations to assure reproduction
        a. pattern of bioluminescent organs for recognition
        b. male parasitic on female
      4. Example = Deep-sea Angler Fish
        a. big mouth
        b. sharp teeth
        c. distensible stomach
        d. black lined stomach
        e. bioluminescent lure
        f. parasitic male
    E. Hydrothermal Vent Communities found only near volcanic activity on sea floor
      1. First discovered in 1975-77, before this it was thought there were few life forms in hot areas near volcanism on sea floor.
        a. hot spots
        b. plate boundaries
        c. rift valleys of oceanic ridges and rises
      2. Water (heated by magma and leaches minerals from the magma) rises from ocean bottom as black smokers
        - dark, cloudy water (minerals like iron, copper, sulfur)
        - minerals precipitate out near ocean bottom and form 'chimneys' (up to 40 feet tall)
          * chimneys grow, break and change
          * chimneys choke off in time and water vents elsewhere
        - no animals can live on these hot chimneys but they live nearby
      3. Vent communities common all over the world where volcanism is in deep-sea
        a. Bacteria are the base of the trophic pyramid in vent communities
          - extremophylls, capable of living in super heated water
          - chemosynthetic, capable of producing 'cell food' (for cellular respiration) from minerals in the water
          - live all over vent areas as mats and in the water
        b. Filter feeders are second step in trophic pyramid (primary consumers)
          - clams - with red bodies
          - mussels - with red bodies
        c. Carnivores are third step in trophic pyramid (secondary consumers)
          - fish
          - octopus
        d. Vent worms = beard worms = vestimintiferan worms - highly abundant
          - 3-6 foot tall
          - grow in large concentrations
          - white flexible tubes and deep red body
          - no gut
          - rely on symbiotic bacteria for food (similar to relationship of reef-building corals with their zooxanthellae)
          - one of the fastest growing invertebrate animals (up to 3-4 feet per year)

© 2001 Genny Anderson
(Revised 3 November 2008)
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